Frequently Used Bioinformatics Programs Supporting tagline
Bioinformatics programs
List of programs I use frequently – currently being edited:
SAMtools
BEDtools
BAMtools
IGV
PAGIT
R
BLAST
Cytoscape
MAQ
bioawk/awk
Tuxedo Suite (bowtie, bowtie2, tophat, cufflinks, cummeRbund)
bwa / bwa-mem
abyss
SPAdes
velvet
Quast
FastQC
Jellyfish
screed / khmer
minia
kmer-genie
mothur
qiime
Oases